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Publications
from the Wolfe Laboratory
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Offei B, Braun-Galleani S, Venkatesh A, Casey WT, O'Connor KE, Byrne KP,
Wolfe KH. Identification of genetic variants of the industrial yeast
Komagataella phaffii (Pichia pastoris) that contribute to increased yields of
secreted heterologous proteins. PLoS Biol. 2022 Dec 15;20(12):e3001877.
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Bergin SA, Allen S, Hession C, Ó Cinnéide E, Ryan A, Byrne KP, Ó Cróinín T,
Wolfe KH, Butler G. Identification of European isolates of the lager yeast
parent Saccharomyces eubayanus. FEMS Yeast Res. 2022 Dec 7;22(1):foac053.
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Salzberg LI, Martos AAR, Lombardi L, Jermiin LS, Blanco A, Byrne KP, Wolfe
KH. A widespread inversion polymorphism conserved among Saccharomyces species is
caused by recurrent homogenization of a sporulation gene family. PLoS Genet.
2022 Nov 28;18(11):e1010525.
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Don A, Byrne KP, Alqaderi F, Mazhova A, O'Leary Chaney B, Redmond S, Allen S,
Gao J, Ó Cinnéide E, Bergin SA, Hession C, Wolfe KH, Butler G. Draft Genome
Sequence of the Yeast Blastobotrys aristata Strain UCD613, Isolated from Soil in
Ireland. Microbiol Resour Announc. 2022 Nov 17;11(11):e0095722.
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Igharo B, Byrne KP, Ghnewa H, Davey RP, Fubara A, Welc J, Oubihi S, Moore L,
Smith C, Ó Cinnéide E, Bergin SA, Hession C, Wolfe KH, Butler G. Draft Genome
Sequence of the Yeast Torulaspora quercuum Strain UCD657, Isolated from Soil in
Ireland. Microbiol Resour Announc. 2022 Nov 17;11(11):e0095222.
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Bergin SA, Zhao F, Ryan AP, Müller CA, Nieduszynski CA, Zhai B, Rolling T,
Hohl TM, Morio F, Scully J, Wolfe KH, Butler G. Systematic Analysis of Copy
Number Variations in the Pathogenic Yeast Candida parapsilosis Identifies a Gene
Amplification in RTA3 That is Associated with Drug Resistance. mBio. 2022
Oct 26;13(5):e0177722.
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Wolfe KH, Butler G. Mating-Type Switching in Budding Yeasts, from Flip/Flop
Inversion to Cassette Mechanisms. Microbiol Mol Biol Rev. 2022 Jun
15;86(2):e0000721.
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Rueda-Mejia MP, Nägeli L, Lutz S, Ortiz-Merino RA, Frei D, Frey JE, Wolfe
KH, Ahrens CH, Freimoser FM. Genome sequence data of the antagonistic soil-borne
yeast Cyberlindnera sargentensis (SHA 17.2). Data Brief. 2022 Jan
5;40:107799.
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Hanson SJ, Cinnéide EÓ, Salzberg LI, Wolfe KH, McGowan J, Fitzpatrick DA,
Matlin K. Genomic diversity, chromosomal rearrangements, and interspecies
hybridization in the Ogataea polymorpha species complex. G3 (Bethesda). 2021 Aug
7;11(8):jkab211.
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Ó Cinnéide E, Jones M, Bahate E, Boyd E, Clavero R, Doherty H, Drozdz I,
Dumana M, Gonzales C, Kennedy J, Khan M, Maher S, McGurk C, Moreau K, Neville R,
Norton J, Ó Cróinín T, O'Gorman E, Olliff JC, Orimaco R, Quinn E, Webb Kennedy
S, Bergin SA, Byrne KP, Wolfe KH, Butler G. Draft Genome Sequence of the Yeast
Ogataea degrootiae Strain UCD465, Isolated from Soil in Ireland.
Microbiol Resour Announc. 2021 Sep 30;10(39):e0073621.
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Ryan A, Ó Cinnéide E, Bergin SA, Alhajeri G, Almotawaa H, Daly I, Heneghan
S, Horan K, Kavanagh R, Keane C, Martin A, McDonagh A, O'Leary J, Osborne M,
Watson E, Byrne KP, Wolfe KH, Butler G. Draft Genome Sequence of a Diploid and
Hybrid Candida Strain, Candida sanyaensis UCD423, Isolated from
Compost in Ireland. Microbiol Resour Announc. 2021 Sep 23;10(38):e0076121.
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Nishant KT, Wloch-Salamon D, Wolfe KH, Nobile CJ. Into the wild-Exploring
the life cycles of yeasts. Yeast. 2021 Jan;38(1):3-4.
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Venkatesh A, Murray AL, Coughlan AY, Wolfe KH. Giant GAL gene clusters for
the melibiose-galactose pathway in Torulaspora. Yeast. 2021 Jan;38(1):117-126.
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Ola M, O'Brien CE, Coughlan AY, Ma Q, Donovan PD, Wolfe KH, Butler G.
Polymorphic centromere locations in the pathogenic yeast Candida
parapsilosis. Genome Res. 2020 May;30(5):684-696.
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Coughlan AY, Lombardi L, Braun-Galleani S, Martos AA, Galeote V, Bigey F,
Dequin S, Byrne KP, Wolfe KH. The yeast mating-type switching endonuclease HO is
a domesticated member of an unorthodox homing genetic element family. Elife.
2020 Apr 27;9:e55336.
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Varela JA, Puricelli M, Ortiz-Merino RA, Giacomobono R, Braun-Galleani S,
Wolfe KH, Morrissey JP. Origin of Lactose Fermentation in Kluyveromyces
lactis by Interspecies Transfer of a Neo-functionalized Gene Cluster during
Domestication. Curr Biol. 2019 Dec 16;29(24):4284-4290.e2.
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Braun-Galleani S, Dias JA, Coughlan AY, Ryan AP, Byrne KP, Wolfe KH. Genomic
diversity and meiotic recombination among isolates of the biotech yeast
Komagataella phaffii (Pichia pastoris). Microb Cell Fact. 2019 Dec 4;18(1):211.
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Heneghan P, Ryan AP, Nimmo D, Duggan C, Kumar P, O'Gaora P, Ó 'Cinnéide E,
Byrne KP, Wolfe KH, O'Brien CE, Butler G. Draft Genome Sequence of the Birch
Tree Fungal Pathogen Taphrina betulina UCD315. Microbiol Resour Announc. 2019
Nov 27;8(48):e01255-19.
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Feng D, Stoyanov A, Olliff JC, Wolfe KH, Lahtchev K, Hanson SJ. Carbon
source requirements for mating and mating-type switching in the methylotrophic
yeasts Ogataea (Hansenula) polymorpha and Komagataella phaffii (Pichia
pastoris). Yeast. 2020 Feb;37(2):237-245.
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Faherty L, Lewis C, McElheron M, Garvey N, Duggan R, Shovlin B, Ó Cróinín T,
Byrne KP, O'Brien CE, Wolfe KH, Butler G. Draft Genome Sequences of Two Isolates
of the Yeast Kazachstania servazzii Recovered from Soil in Ireland. Microbiol
Resour Announc. 2019 Oct 31;8(44):e01257-19.
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Almasoud J, McArdle L, Henne R, Mathews K, O'Connor Í, McLoughlin LE,
Ó'Gaora P, Byrne KP, O'Brien CE, Wolfe KH, Butler G. Draft Genome Sequence of a
Red Basidiomycete Yeast, Symmetrospora coprosmae Strain UCD350, Isolated from
Soil in Ireland. Microbiol Resour Announc. 2019 Oct 31;8(44):e01256-19.
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Drinnenberg IA, Berger F, Elsässer SJ, Andersen PR, Ausió J, Bickmore WA,
Blackwell AR, Erwin DH, Gahan JM, Gaut BS, Harvey ZH, Henikoff S, Kao JY,
Kurdistani SK, Lemos B, Levine MT, Luger K, Malik HS, Martín-Durán JM, Peichel
CL, Renfree MB, Rutowicz K, Sarkies P, Schmitz RJ, Technau U, Thornton JW,
Warnecke T, Wolfe KH. EvoChromo: towards a synthesis of chromatin biology and
evolution. Development. 2019 Sep 26;146(19):dev178962.
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Douglass AP, Byrne KP, Wolfe KH. The Methylotroph Gene Order Browser (MGOB)
reveals conserved synteny and ancestral centromere locations in the yeast family
Pichiaceae. FEMS Yeast Res. 2019 Sep 1;19(6):foz058.
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Krassowski T, Kominek J, Shen XX, Opulente DA, Zhou X, Rokas A, Hittinger
CT, Wolfe KH. Multiple Reinventions of Mating-type Switching during Budding
Yeast Evolution. Curr Biol. 2019 Aug 5;29(15):2555-2562.e8.
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Palmer-Brown W, Miranda-CasoLuengo R, Wolfe KH, Byrne KP, Murphy CD. The
CYPome of the model xenobiotic-biotransforming fungus Cunninghamella elegans.
Sci Rep. 2019 Jun 25;9(1):9240.
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Gore-Lloyd D, Sumann I, Brachmann AO, Schneeberger K, Ortiz-Merino RA,
Moreno-Beltrán M, Schläfli M, Kirner P, Santos Kron A, Rueda-Mejia MP,
Somerville V, Wolfe KH, Piel J, Ahrens CH, Henk D, Freimoser FM. Snf2 controls
pulcherriminic acid biosynthesis and antifungal activity of the biocontrol yeast
Metschnikowia pulcherrima. Mol Microbiol. 2019 Jul;112(1):317-332.
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Douglass AP, O'Brien CE, Offei B, Coughlan AY, Ortiz-Merino RA, Butler G,
Byrne KP, Wolfe KH. Coverage-Versus-Length Plots, a Simple Quality Control Step
for de Novo Yeast Genome Sequence Assemblies. G3 (Bethesda). 2019 Mar
7;9(3):879-887.
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Coughlan AY, Wolfe KH. The reported point centromeres of Scheffersomyces
stipitis are retrotransposon long terminal repeats. Yeast. 2019
May;36(5):275-283.
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Braun-Galleani S, Ortiz-Merino RA, Wu Q, Xu Y, Wolfe KH. (2018)
Zygosaccharomyces pseudobailii, another yeast interspecies hybrid that regained fertility by damaging one of its MAT loci.
FEMS Yeast Res. 18:foy079
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Douglass AP, Offei B, Braun-Galleani S, Coughlan AY, Martos AAR, Ortiz-Merino RA, Byrne KP, Wolfe KH. (2018)
Population genomics shows no distinction between pathogenic Candida krusei and environmental Pichia kudriavzevii: One species, four names.
PLoS Pathog. 14: e1007138
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Galeote V, Bigey F, Devillers H, Ortiz-Merino RA, Dequin S, Wolfe KH, Neuvéglise C. (2018)
Genome Sequence of Torulaspora microellipsoides CLIB 830T.
Genome Announc. 6: e00615-18
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Venkatesh A, Murray AL, Boyle AB, Quinn Farrington L, Maher TJ, Ó'Gaora P, Wolfe KH, O'Brien CE, Butler G. (2018)
Draft Genome Sequence of a Highly Heterozygous Yeast Strain from the Metschnikowia pulcherrima Subclade, UCD127.
Genome Announc. 6: e00548-18
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O'Boyle S, Bergin SA, Hussey ÉE, McLaughlin AD, Riddell LR, Byrne KP, Wolfe KH, O'Brien CE, Butler G. (2018)
Draft Genome Sequence of the Yeast Nadsonia starkeyi-henricii UCD142, Isolated from Forest Soil in Ireland.
Genome Announc. 6: e00549-18
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Mullen AA, Lynch CD, Hill SM, Holohan CP, Ó Cróinín T, Wolfe KH, O'Brien CE, Butler G. (2018)
Draft Genome Sequences of Two Natural Isolates of the Yeast Barnettozyma californica from Ireland, UCD09 and UCD89.
Genome Announc. 6: e00548-18
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Donovan PD, Holland LM, Lombardi L, Coughlan AY, Higgins DG, Wolfe KH, Butler G. (2018)
TPP riboswitch-dependent regulation of an ancient thiamin transporter in Candida
PLoS Genet. 14: e1007429
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Krassowski T*, Coughlan AY*, Shen XX, Zhou X, Kominek J, Opulente DA, Riley R, Grigoriev IV, Maheshwari N, Shields DC, Kurtzman CP, Hittinger CT, Rokas A, Wolfe KH. (2018)
Evolutionary instability of CUG-Leu in the genetic code of budding yeasts.
Nat Commun. 9: 1887.
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Ortiz-Merino RA, Varela JA, Coughlan AY, Hoshida H, da Silveira WB, Wilde C, Kuijpers NGA, Geertman JM, Wolfe KH, Morrissey JP. (2018)
Ploidy Variation in Kluyveromyces marxianus Separates Dairy and Non-dairy Isolates.
Front Genet. 9: 94.
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Ortiz-Merino RA, Kuanyshev N, Byrne KP, Varela JA, Morrissey JP, Porro D, Wolfe KH, Branduardi P. (2018)
Transcriptional Response to Lactic Acid Stress in the Hybrid Yeast Zygosaccharomyces parabailii.
Appl Environ Microbiol. 84: e02294-17
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Hanson SJ, Byrne KP, Wolfe KH. (2017)
Flip/flop mating-type switching in the methylotrophic yeast Ogataea polymorpha is regulated by an Efg1-Rme1-Ste12 pathway.
PLoS Genet. 13: e1007092.
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Wolfe KH, Butler G. (2017)
Evolution of Mating in the Saccharomycotina.
Annu Rev Microbiol. 71: 197-214.
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Ortiz-Merino RA, Kuanyshev N, Braun-Galleani S, Byrne KP, Porro D, Branduardi P, Wolfe KH (2017)
Evolutionary restoration of fertility in an interspecies hybrid yeast, by whole-genome duplication after a failed mating-type switch.
PLoS Biol. 15: e2002128.
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Coughlan AY, Hanson SJ, Byrne KP, Wolfe KH. (2016)
Centromeres of the Yeast Komagataella phaffii (Pichia pastoris) Have a Simple Inverted-Repeat Structure.
Genome Biol Evol. 8: 2482-92.
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Schröder MS, Martinez de San Vicente K, Prandini TH, Hammel S, Higgins DG, Bagagli E, Wolfe KH, Butler G. (2016)
Multiple Origins of the Pathogenic Yeast Candida orthopsilosis by Separate Hybridizations between Two Parental Species.
PLoS Genet. 12: e1006404.
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Riley R, Haridas S, Wolfe KH, Lopes MR, Hittinger CT, Göker M, Salamov AA,
Wisecaver JH, Long TM, Calvey CH, Aerts AL, Barry KW, Choi C, Clum A, Coughlan
AY, Deshpande S, Douglass AP, Hanson SJ, Klenk HP, LaButti KM, Lapidus A,
Lindquist EA, Lipzen AM, Meier-Kolthoff JP, Ohm RA, Otillar RP, Pangilinan JL,
Peng Y, Rokas A, Rosa CA, Scheuner C, Sibirny AA, Slot JC, Stielow JB, Sun H,
Kurtzman CP, Blackwell M, Grigoriev IV, Jeffries TW. (2016)
Comparative genomics of biotechnologically important yeasts.
Proc Natl Acad Sci U S A. 113: 9882-7.
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Pryszcz LP, Németh T, Saus E, Ksiezopolska E, Hegedüsová E, Nosek J, Wolfe KH, Gacser A, Gabaldón T. (2015)
The Genomic Aftermath of Hybridization in the Opportunistic Pathogen Candida metapsilosis.
PLoS Genet. 11: e1005626.
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Wolfe KH. (2015)
Origin of the Yeast Whole-Genome Duplication.
PLoS Biol. 13: e1002221.
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Kobayashi N, Suzuki Y, Schoenfeld LW, Müller CA, Nieduszynski C, Wolfe KH, Tanaka TU. (2015)
Discovery of an unconventional centromere in budding yeast redefines evolution of point centromeres.
Curr Biol. 25:m 2026-33.
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Wolfe KH, Armisén D, Proux-Wera E, ÓhÉigeartaigh SS, Azam H, Gordon JL, Byrne KP. (2015)
Clade- and species-specific features of genome evolution in the Saccharomycetaceae.
FEMS Yeast Res. 15: fov035
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Monerawela C, James TC, Wolfe KH, Bond U. (2015)
Loss of lager specific genes and subtelomeric regions define two different Saccharomyces cerevisiae lineages for Saccharomyces pastorianus Group I and II strains.
FEMS Yeast Res. 15.pii: fou008.
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Pitoniak A, Chavel CA, Chow J, Smith J, Camara D, Karunanithi S, Li B, Wolfe KH, Cullen PJ. (2015)
Cdc42p-interacting protein Bem4p regulates the filamentous-growth mitogen-activated protein kinase pathway.
Mol Cell Biol. 35: 417-36.
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Hanson SJ, Byrne KP, Wolfe KH. (2014)
Mating-type switching by chromosomal inversion in methylotrophic yeasts suggests an origin for the three-locus Saccharomyces cerevisiae system.
Proc Natl Acad Sci U S A. 111: E4851-8
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OhÉigeartaigh SS, Armisén D, Byrne KP, Wolfe KH. (2014)
SearchDOGS bacteria, software that provides automated identification of potentially missed genes in annotated bacterial genomes.
J Bacteriol. 196: 2030-42.
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Maguire SL, Wang C, Holland LM, Brunel F, Neuvéglise C, Nicaud JM, Zavrel M, White TC, Wolfe KH, Butler G. (2014)
Zinc finger transcription factors displaced SREBP proteins as the major Sterol regulators during Saccharomycotina evolution.
PLoS Genet. 10: e1004076.
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Maguire S.L., OhÉigeartaigh S.S., Byrne K.P., Schröder M.S., O'Gaora P., Wolfe K.H. Butler G. (2013)
Comparative genome analysis and gene finding in Candida species using CGOB.
Mol Biol Evol. 30: 1281-91.
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Proux-Wéra E., Byrne K.P., Wolfe K.H. (2013)
Evolutionary mobility of the ribosomal DNA array in yeasts.
Genome Biol Evol. 5: 525-31.
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Proux-Wéra E., Armisén D., Byrne K.P., Wolfe K.H. (2012)
A pipeline for automated annotation of yeast genome sequences by a conserved-synteny approach.
BMC Bioinformatics. 13: 237
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Riccombeni A., Vidanes G., Proux-Wéra E., Wolfe K.H., Butler G. (2012)
Sequence and analysis of the genome of the pathogenic yeast Candida orthopsilosis.
PLoS One. 7: e35750.
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Gordon J.L., Armisién D., Proux-Wéra E., ÓhÉigeartaigh S.S., Byrne K.P. & Wolfe K.H. (2011)
Evolutionary erosion of yeast sex chromosomes by mating-type switching accidents.
Proc Natl Acad Sci U S A. 108: 20024-9.
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Gordon J.L., Byrne K.P. & Wolfe K.H. (2011) Mechanisms of chromosome number evolution in
yeast. PLoS Genet. 7, e1002190.
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OhÉigeartaigh S.S., Armisén D., Byrne K.P. & Wolfe K.H. (2011) Systematic discovery of
unannotated genes in 11 yeast species using a database of orthologous genomic segments. BMC Genomics. 12, 377.
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Lane M.M., Burke N., Karreman R., Wolfe K.H., O'Byrne C.P. & Morrissey J.P. (2011)
Physiological and metabolic diversity in the yeast Kluyveromyces marxianus. Antonie Van Leeuwenhoek. 2011.
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Khaldi N. & Wolfe K.H. (2011) Evolutionary Origins of the Fumonisin Secondary Metabolite
Gene Cluster in Fusarium verticillioides and Aspergillus niger. Int J Evol Biol. 2011, 423821.
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Magee A.M., Aspinall S., Rice D.W., Cusack B.P., Sémon M., Perry A.S., Stefanovic S., Milbourne D., Barth S., Palmer J.D., Gray J.C., Kavanagh T.A. & Wolfe K.H. (2010)
Localized hypermutation and associated gene losses in legume chloroplast genomes. Genome Res. 20, 1700-10.
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Khaldi N., Seifuddin F.T., Turner G., Haft D., Nierman W.C., Wolfe K.H. & Fedorova N.D. (2010)
SMURF: Genomic mapping of fungal secondary metabolite clusters. Fungal Genet Biol. 47, 736-41.
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Lynch D.B., Logue M.E., Butler G. & Wolfe K.H. (2010) Chromosomal G + C content evolution in
yeasts: systematic interspecies differences, and GC-poor troughs at centromeres. Genome Biol Evol. 2, 572-83.
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Drinnenberg I.A., Weinberg D.E., Xie K.T., Mower J.P., Wolfe K.H., Fink G.R. & Bartel D.P. (2009)
RNAi in budding yeast. Science. 326, 544-50.
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Frank A.C. & Wolfe K.H. (2009) Evolutionary capture of viral and plasmid DNA by yeast
nuclear chromosomes. Eukaryot Cell. 8i, 1521-31.
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Diekmann K., Hodkinson T.R., Wolfe K.H., van den Bekerom R., Dix P.J. & Barth S. (2009)
Complete chloroplast genome sequence of a major allogamous forage species,
perennial ryegrass (Lolium perenne L.). DNA Res. 16, 165-76.
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Gordon J.L., Byrne K.P. & Wolfe K.H. (2009) Additions, losses, and rearrangements on the
evolutionary route from a reconstructed ancestor to the modern Saccharomyces cerevisiae genome. PLoS Genet. 5, e1000485.
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Gallagher J.E., Babiarz J.E., Teytelman L., Wolfe K.H. & Rine J. (2009) Elaboration,
diversification and regulation of the Sir1 family of silencing proteins in Saccharomyces. Genetics. 181, 1477-91.
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Williams T.A., Wolfe K.H. & Fares M.A. (2009) No rosetta stone for a sense-antisense
origin of aminoacyl tRNA synthetase classes. Mol Biol Evol. 26, 445-50.
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Conant G.C. & Wolfe K.H. (2008) Turning a hobby into a job: how duplicated genes find
new functions. Nat Rev Genet. 9, 938-50.
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Khaldi, N. & Wolfe, K. H. (2008) Elusive origins of the extra genes in Aspergillus oryzae. PLoS ONE 3, e3036.
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Conant, G.C. & Wolfe, K.H. (2008) Probabilistic cross-species inference of orthologous genomic regions created by whole-genome duplication in yeast. Genetics 179, 1681-92.
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Semon, M. & Wolfe, K. H. (2008) Preferential subfunctionalization of slow-evolving genes in Xenopus laevis. Proc. Natl. Acad. Sci. USA 105, 8333-8338.
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Gordon, J. L. & Wolfe, K. H. (2008) Recent allopolyploid origin of Zygosaccharomyces rouxii strain ATCC 42981. Yeast 25, 449-456.
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Fedorova, N. D., Khaldi, N., Joardar, V. S., Maiti, R., Amedeo, P., Anderson, M. J., Crabtree, J., Silva, J. C., Badger, J. H., Albarraq, A., Angiuoli, S., Bussey, H., Bowyer, P., Cotty, P. J., Dyer, P. S., Egan, A., Galens, K., Fraser-Liggett, C. M., Haas, B. J., Inman, J. M., Kent, R., Lemieux, S., Malavazi, I., Orvis, J., Roemer, T., Ronning, C. M., Sundaram, J. P., Sutton, G., Turner, G., Venter, J. C., White, O. R., Whitty, B. R., Youngman, P., Wolfe, K. H., Goldman, G. H., Wortman, J. R., Jiang, B., Denning, D. W. & Nierman, W. C. (2008) Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus. PLoS Genet. 4, e1000046.
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Conant, G. C. & Wolfe, K. H. (2008) GenomeVx: simple web-based creation of editable circular chromosome maps. Bioinformatics 24, 861-862.
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Khaldi, N., Collemare, J., Lebrun, M. H. & Wolfe, K. H. (2008) Evidence for horizontal transfer of a secondary metabolite gene cluster between fungi. Genome Biol. 9, R18.
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Scannell, D. R. & Wolfe, K. H. (2008) A burst of protein sequence evolution and a prolonged period of asymmetric evolution follow gene duplication in yeast. Genome Res. 18, 137-147.
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Semon, M. & Wolfe, K. H. (2007) Consequences of genome duplication. Curr. Opin. Genet. Devel. 17, 505-512.
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Conant, G.C. & Wolfe, K.H. (2007) Increased glycolytic
flux as an outcome of whole-genome duplication in yeast. Mol.
Syst. Biol. 3: 129. |
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Spillane, C., Schmid, K.J., Laoueille-Duprat, S., Pien, S.,
Escobar-Restrepo, J.M., Baroux, C., Gagliardini, V., Page, D.R.,
Wolfe, K.H. & Grossniklaus, U. (2007) Positive darwinian selection
at the imprinted MEDEA locus in plants. Nature 448: 349-52.
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Scannell, D.R., Butler, G. & Wolfe, K.H. (2007) Yeast
genome evolution-the origin of the species. Yeast 24: 929-42. |
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Scannell, D.R., Frank, A.C., Conant, G.C., Byrne, K.P., Woolfit,
M. & Wolfe, K.H. (2007) Independent sorting-out of thousands
of duplicated gene pairs in two yeast species descended from a whole-genome
duplication. Proc. Natl. Acad. Sci. U S A 104: 8397-402.
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Cusack, B.P. & Wolfe, K.H. (2007) When gene marriages
don't work out: divorce by subfunctionalization. Trends Genet.
23: 270-2. |
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Woolfit, M., Rozpedowska, E., Piskur, J. & Wolfe, K.H.
(2007) Genome survey sequencing of the wine spoilage yeast Dekkera
(Brettanomyces) bruxellensis. Eukaryot. Cell 6: 721-33.
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Semon, M. & Wolfe, K.H. (2007) Reciprocal gene loss between
Tetraodon and zebrafish after whole genome duplication in their
ancestor. Trends Genet. 23: 108-12. |
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Semon, M. & Wolfe, K.H. (2007) Rearrangement rate following
the whole-genome duplication in teleosts. Mol. Biol. Evol.
24: 860-7. |
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Byrne, K.P. & Wolfe, K.H. (2007) Consistent patterns
of rate asymmetry and gene loss indicate widespread neofunctionalization
of yeast genes after whole-genome duplication. Genetics 175:
1341-50. |
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Cusack, B.P. & Wolfe, K.H. (2007) Not born equal: increased
rate asymmetry in relocated and retrotransposed rodent gene duplicates.
Mol. Biol. Evol. 24: 679-86. |
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Drea, S.C., Lao, N.T., Wolfe, K.H. &, Kavanagh, T.A.
(2006) Gene duplication, exon gain and neofunctionalization of OEP16-related
genes in land plants. Plant J. 46: 723-35. |
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Kosa, P., Valach, M., Tomaska, L., Wolfe, K.H. & Nosek,
J. (2006) Complete DNA sequences of the mitochondrial genomes of
the pathogenic yeasts Candida orthopsilosis and Candida
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